iCount
protein-RNA interaction analytics
Navigation
Tutorial
Installation
Reference
Contributing
Frequently asked questions
Version history
License
How to cite
Related Topics
Documentation overview
Quick search
Index
_
|
A
|
B
|
C
|
D
|
F
|
G
|
I
|
M
|
O
|
P
|
R
|
S
|
T
|
W
_
__init__() (iCount.metrics.Metrics method)
A
annotate_cross_links() (in module iCount.analysis.annotate)
annotation() (in module iCount.genomes.ensembl)
B
build_index() (in module iCount.externals.star)
C
chrom_length() (in module iCount.genomes.ensembl)
close() (iCount.files.fastq.FastqFile method)
convert_legacy() (in module iCount.files.bed)
cumulative_prob() (in module iCount.analysis.peaks)
D
decompress_to_tempfile() (in module iCount.files)
F
FastqEntry (class in iCount.files.fastq)
FastqFile (class in iCount.files.fastq)
G
genome() (in module iCount.genomes.ensembl)
get_avg_rnd_distrib() (in module iCount.analysis.peaks)
get_ftp_instance() (in module iCount.genomes.ensembl)
get_qual_encoding() (in module iCount.files.fastq)
get_regions() (in module iCount.genomes.segment)
get_version() (in module iCount.externals.cutadapt)
(in module iCount.externals.star)
group_by_end() (in module iCount.mapping.filters)
group_by_start() (in module iCount.mapping.filters)
gz_open() (in module iCount.files)
I
iCount (module)
,
[1]
iCount.analysis (module)
iCount.analysis.annotate (module)
iCount.analysis.clusters (module)
iCount.analysis.group (module)
iCount.analysis.kmers (module)
iCount.analysis.peaks (module)
iCount.analysis.rnamaps (module)
iCount.analysis.summary (module)
iCount.cli (module)
iCount.demultiplex (module)
iCount.examples (module)
iCount.externals (module)
iCount.externals.cutadapt (module)
iCount.externals.star (module)
iCount.files (module)
iCount.files.bed (module)
iCount.files.fasta (module)
iCount.files.fastq (module)
iCount.genomes (module)
iCount.genomes.ensembl (module)
iCount.genomes.segment (module)
iCount.mapping (module)
iCount.mapping.filters (module)
iCount.mapping.indexstar (module)
iCount.mapping.mapstar (module)
iCount.mapping.xlsites (module)
iCount.metrics (module)
M
make_normalization() (in module iCount.analysis.rnamaps)
make_parser_from_function() (in module iCount.cli)
make_summary_report() (in module iCount.analysis.summary)
make_types_length_file() (in module iCount.analysis.summary)
map_reads() (in module iCount.externals.star)
merge_bed() (in module iCount.files.bed)
Metrics (class in iCount.metrics)
O
OUTPUT_ROOT (in module iCount)
P
plot_rna_map() (in module iCount.analysis.rnamaps)
R
read() (iCount.files.fastq.FastqFile method)
read_fasta() (in module iCount.files.fasta)
releases() (in module iCount.genomes.ensembl)
remove_duplicates() (in module iCount.mapping.filters)
remove_wrong_assignments() (in module iCount.mapping.filters)
run() (in module iCount.analysis.clusters)
(in module iCount.analysis.peaks)
(in module iCount.analysis.rnamaps)
(in module iCount.demultiplex)
(in module iCount.examples)
(in module iCount.externals.cutadapt)
(in module iCount.mapping.xlsites)
S
species() (in module iCount.genomes.ensembl)
T
TMP_ROOT (in module iCount)
W
write() (iCount.files.fastq.FastqFile method)